package tech.v3.dataset; import static tech.v3.Clj.*; import clojure.lang.IFn; import java.util.Map; /** * High speed grouping aggregations based on sequences of datasets. */ public class Reductions { private Reductions(){} static final IFn reducerFn = requiringResolve("tech.v3.dataset.reductions", "reducer"); static final IFn sumFn = requiringResolve("tech.v3.dataset.reductions", "sum"); static final IFn meanFn = requiringResolve("tech.v3.dataset.reductions", "mean"); static final IFn rowCountFn = requiringResolve("tech.v3.dataset.reductions", "row-count"); static final IFn distinctFn = requiringResolve("tech.v3.dataset.reductions", "distinct"); static final IFn countDistinctFn = requiringResolve("tech.v3.dataset.reductions", "count-distinct"); static final IFn reservoirDsFn = requiringResolve("tech.v3.dataset.reductions", "reservoir-dataset"); static final IFn reservoirDescStatFn = requiringResolve("tech.v3.dataset.reductions", "reservoir-desc-stat"); static final IFn probSetCardFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-set-cardinality"); static final IFn probQuantilesFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-quantiles"); static final IFn probQuantileFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-quantile"); static final IFn probMedianFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-median"); static final IFn probCdfsFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-cdfs"); static final IFn probPmfsFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-pmfs"); static final IFn probIQRangeFn = requiringResolve("tech.v3.dataset.reductions.apache-data-sketch", "prob-interquartile-range"); static final IFn groupByColumnAggFn = requiringResolve("tech.v3.dataset.reductions", "group-by-column-agg"); /** * Group a sequence of datasets by column or columns an in the process perform an aggregation. * The resulting dataset will have one row per grouped key. Columns used as keys will always * be represented in the result. * * @param dsSeq Sequence of datasets such as produced by rowMapcat, dsPmap, or loading many * files. * @param colname Either a single column name or a vector of column names. These will be the * grouping keys. * @param aggMap Map of result colname to reducer. Various reducers are provided or you can * build your own via the `reducer` function. * @param options Options map. Described below. May be null. * * Options: * * * `:map-initial-capacity` - initial hashmap capacity. Resizing hash-maps is expensive * so we would like to set this to something reasonable. Defaults to 100000. * * `:index-filter` - A function that given a dataset produces a function from long index * to boolean. Only indexes for which the index-filter returns true will be added to the * aggregation. For very large datasets, this is a bit faster than using filter before * the aggregation. * * Example: * *```java * //Begin parallelized expansion *Iterable dsSeq = (Iterable)rowMapcat(srcds, tallyDays, hashmap(kw("result-type"), kw("as-seq"))); * * //The first aggregation is to summarize by placement and simulation the year-month tallies. * //We are essentially replacing count with a summarized count. After this statement * //we can guarantee that the dataset has unique tuples of [simulation, placement, year-month] *Map initAgg = Reductions.groupByColumnsAgg(dsSeq, vector("simulation", "placement", "year-month"), * hashmap("count", Reductions.sum("count")), * null); *println(head(initAgg)); * //["simulation" "placement" "year-month"]-aggregation [5 4]: * * //| simulation | placement | year-month | count | * //|-----------:|----------:|------------|------:| * //| 0 | 0 | 2020-12 | 622.0 | * //| 0 | 1 | 2020-12 | 591.0 | * //| 0 | 2 | 2020-12 | 500.0 | * //| 0 | 3 | 2020-12 | 549.0 | * //| 0 | 4 | 2020-12 | 595.0 | * * // The second aggregation allows us to build of statistics over each placement/year-month * // pair thus finding out the distribution of a given placement, year-month across simluations *Map result = Reductions.groupByColumnsAgg(vector(initAgg), vector("placement", "year-month"), * hashmap("min-count", Reductions.probQuantile("count", 0.0), * "low-95-count", Reductions.probQuantile("count", 0.05), * "q1-count", Reductions.probQuantile("count", 0.25), * "median-count", Reductions.probQuantile("count", 0.5), * "q3-count", Reductions.probQuantile("count", 0.75), * "high-95-count", Reductions.probQuantile("count", 0.95), * "max-count", Reductions.probQuantile("count", 1.0), * "count", Reductions.sum("count")), * null); * //Take a million row dataset, expand it, then perform two grouping aggregations. *println(head(result)); * //["placement" "year-month"]-aggregation [5 10]: * * //| q3-count | median-count | min-count | high-95-count | placement | max-count | count | low-95-count | q1-count | year-month | * //|---------:|-------------:|----------:|--------------:|----------:|----------:|--------:|-------------:|---------:|------------| * //| 646.0 | 593.0 | 366.0 | 716.0 | 36 | 809.0 | 58920.0 | 475.0 | 536.0 | 2020-12 | * //| 621.0 | 560.0 | 376.0 | 739.0 | 36 | 782.0 | 57107.0 | 459.0 | 512.0 | 2020-10 | * //| 168.0 | 139.0 | 25.0 | 211.0 | 0 | 246.0 | 13875.0 | 76.0 | 112.0 | 2021-01 | * //| 658.0 | 607.0 | 384.0 | 745.0 | 0 | 825.0 | 60848.0 | 486.0 | 561.0 | 2020-12 | * //| 628.0 | 581.0 | 422.0 | 693.0 | 0 | 802.0 | 58148.0 | 468.0 | 539.0 | 2020-11 | *``` */ public static Map groupByColumnsAgg(Iterable dsSeq, Object colname, Map aggMap, Map options) { return (Map)groupByColumnAggFn.invoke(colname, aggMap, options, dsSeq); } /** * Create a custom reducer. perElemFn is passed the last return value as the first argument * followed by a value from each column as additional arguments. It must always return the * current context. * * This is a easy way to instantiate tech.v3.datatype.IndexReduction so if you really need * the best possible performance you need to implement three methods of IndexReduction: * * * `prepareBatch` - Passed each dataset before processing. Return value becomes first * argument to `reduceIndex`. * * `reduceIndex` - Passed batchCtx, valCtx, and rowIdx. Must return an updated or * new valCtx. * * `finalize` - Passed valCtx and must return the final per-row value expected in * result dataset. The default is just to return valCtx. * * For `groupByColumnAgg` you do not need to worry about reduceReductions - there is no * merge step. * * @param colname One or more column names. If multiple column names are specified then * perElemFn will need to take additional arguments. * @param perElemFn A function that takes the previous context along with the current row's * column values and returns a new context. * @param finalizeFn Optional function that performs a final calculation taking a context * and returning a value. */ public static Object reducer(Object colname, IFn perElemFn, IFn finalizeFn) { return reducerFn.invoke(colname, perElemFn, finalizeFn); } /** * Create a custom reducer. `perElemFn` is passed the last return value as the first * argument followed by a value from each column as additional arguments. It must always * return the current context. * * This is a easy way to instantiate tech.v3.datatype.IndexReduction so if you really need * the best possible performance you need to implement three methods of IndexReduction: * * * `prepareBatch` - Passed each dataset before processing. Return value becomes first * argument to `reduceIndex`. * * `reduceIndex` - Passed batchCtx, valCtx, and rowIdx. Must return valCtx. * * `finalize` - Passed valCtx and must return the final per-row value expected in * result dataset. * * For `groupByColumnAgg` you do not need to worry about reduceReductions - there is no * merge step. * * @param colname One or more column names. If multiple column names are specified then * perElemFn will need to take additional arguments. * @param perElemFn A function that takes the previous context along with the current row's * column values and returns a new context. */ public static Object reducer(Object colname, IFn perElemFn) { return reducerFn.invoke(colname, perElemFn); } /** * Returns a summation reducer that sums an individual source column. */ public static Object sum(Object colname) { return sumFn.invoke(colname); } /** * Returns a mean reducer that produces a mean value of an individual source column. */ public static Object mean(Object colname) { return meanFn.invoke(colname); } /** * Returns a rowCount reducer that returns the number of source rows aggregated. */ public static Object rowCount(Object colname) { return rowCountFn.invoke(colname); } /** * Returns a distinct reducer produces a set of distinct values. */ public static Object distinct(Object colname) { return distinctFn.invoke(colname); } /** * Returns a distinct reducer that produces a roaringbitmap of distinct values. This is many * times faster than the distinct reducer if your data fits into unsigned int32 space. */ public static Object distinctUInt32(Object colname) { return distinctFn.invoke(colname); } /** * Returns a distinct reducer returns the number of distinct elements. */ public static Object setCardinality(Object colname) { return countDistinctFn.invoke(colname); } /** * Returns a distinct reducer that expects unsigned integer values and returns the number * of distinct elements. This is many times faster than the countDistinct function. */ public static Object setCardinalityUint32(Object colname) { return countDistinctFn.invoke(colname, kw("int32")); } /** * Return a reducer that produces a probabilistically sampled dataset of at most nRows len. */ public static Object reservoirDataset(long nRows) { return reservoirDsFn.invoke(nRows); } /** * Return a reducer which will probabilistically sample the source column producing at most * nRows and then call descriptiveStatistics on it with statName. * * Stat names are described in tech.v3.datatype.Statistics.descriptiveStats. */ public static Object reservoirStats(Object colname, long nRows, Object statName) { return reservoirDescStatFn.invoke(colname, nRows, statName); } /** * Calculate a probabilistic set cardinality for a given column based on one of three * algorithms. * * Options: * * * `:datatype` - One of `#{:float64 :string}`. Unspecified defaults to `:float64`. * * `:algorithm` - defaults to :hyper-log-log. Further algorithm-specific options * may be included in the options map. * * Algorithm specific options: * * * [:hyper-log-log](https://datasketches.apache.org/docs/HLL/HLL.html) * * `:hll-lgk` - defaults to 12, this is log-base2 of k, so k = 4096. lgK can be * from 4 to 21. * * `:hll-type` - One of #{4,6,8}, defaults to 8. The HLL_4, HLL_6 and HLL_8 * represent different levels of compression of the final HLL array where the * 4, 6 and 8 refer to the number of bits each bucket of the HLL array is * compressed down to. The HLL_4 is the most compressed but generally slightly * slower than the other two, especially during union operations. * * [:theta](https://datasketches.apache.org/docs/Theta/ThetaSketchFramework.html) * * [:cpc](https://datasketches.apache.org/docs/CPC/CPC.html) * * `:cpc-lgk` - Defaults to 10. */ public static Object probSetCardinality(Object colname, Map options) { return probSetCardFn.invoke(colname, options); } /** * Probabilistic quantile estimation - see [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * * @param quantiles Sequence of quantiles. * @param k Defaults to 128. This produces a normalized rank error of about 1.7%" */ public static Object probQuantiles(Object colname, Object quantiles, long k) { return probQuantilesFn.invoke(colname, quantiles, k); } /** * Probabilistic quantile estimation using default k of 128. * See [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * * @param quantiles Sequence of numbers from 0-1. */ public static Object probQuantiles(Object colname, Object quantiles) { return probQuantilesFn.invoke(colname, quantiles); } /** * Probabilistic quantile estimation using default k of 128. * See [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * Multiple quantile calculations on a single source column will be merged into a single quantile * calculation so it may be more convenient to use this function to produce multiple quantiles * mapped to several result columns as opposed to ending up with a single column of maps of quantile * to value. * * @param quantile Number from 0-1. * @param k Defaults to 128. This produces a normalized rank error of about 1.7% */ public static Object probQuantile(Object colname, double quantile, long k) { return probQuantileFn.invoke(colname, quantile); } /** * Probabilistic quantile estimation using default k of 128. * See [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * Multiple quantiles will be merged into a single quantile calculation so it may be more * convenient to use this function to produce multiple quantiles mapped to several result * columns as opposed to ending up with a single column of maps of quantile to value. * * @param quantile Number from 0-1. */ public static Object probQuantile(Object colname, double quantile) { return probQuantileFn.invoke(colname, quantile); } /** * Probabilistic median. See documentation for probQuantiles. */ public static Object probMedian(Object colname, long k) { return probMedianFn.invoke(colname, k); } /** * Probabilistic median with default K of 128. See documentation for probQuantiles. */ public static Object probMedian(Object colname) { return probMedianFn.invoke(colname); } /** * Probabilistic interquartile range. See documentation for probQuantile. */ public static Object probInterquartileRange(Object colname, long k) { return probIQRangeFn.invoke(colname, k); } /** * Probabilistic interquartile range. See documentation for probQuantile. */ public static Object probInterquartileRange(Object colname) { return probIQRangeFn.invoke(colname); } /** * Probabilistic CDF calculation, one for each double cdf passed in. * See documentation for progQuantiles. */ public static Object probCDFS(Object colname, Object cdfs, long k) { return probCdfsFn.invoke(colname, cdfs, k); } /** * Probabilistic CDF calculation, one for each double cdf passed in. * See documentation for probQuantiles. */ public static Object probCDFS(Object colname, Object cdfs) { return probCdfsFn.invoke(colname, cdfs); } /** * Returns an approximation to the Probability Mass Function (PMF) of the input stream * given a set of splitPoints (values). See [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * See documentation for probQuantiles. * */ public static Object probPMFS(Object colname, Object pmfs, long k) { return probPmfsFn.invoke(colname, pmfs, k); } /** * Returns an approximation to the Probability Mass Function (PMF) of the input stream * given a set of splitPoints (values). See [DoublesSketch](https://datasketches.apache.org/api/java/snapshot/apidocs/index.html). * See documentation for probQuantiles. * */ public static Object probPMFS(Object colname, Object pmfs) { return probPmfsFn.invoke(colname, pmfs); } }